| # | League Two | PTS | MP | W | D | L | GS | GC | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1 |  Lincoln | 85 | 46 | 23 | 16 | 7 | 73 | 43 | DLDLL |
| 2 |  Bury | 79 | 46 | 22 | 13 | 11 | 82 | 56 | WLWDD |
| 3 |  Milton Keynes Dons | 79 | 46 | 23 | 10 | 13 | 71 | 49 | LWDLW |
| 4 |  Mansfield Town | 76 | 46 | 20 | 16 | 10 | 69 | 41 | LLLDD |
| 5 |  Forest Green | 74 | 46 | 20 | 14 | 12 | 68 | 47 | WLDLD |
| 6 |  Tranmere | 73 | 46 | 20 | 13 | 13 | 63 | 50 | DLWDW |
| 7 |  Newport County | 71 | 46 | 20 | 11 | 15 | 59 | 59 | WDDDL |
| 8 |  Colchester | 70 | 46 | 20 | 10 | 16 | 65 | 53 | LWDWW |
| 9 |  Exeter City | 70 | 46 | 19 | 13 | 14 | 60 | 49 | WLDWD |
| 10 |  Stevenage | 70 | 46 | 20 | 10 | 16 | 59 | 55 | WWDWW |
| 11 |  Carlisle | 68 | 46 | 20 | 8 | 18 | 67 | 62 | LWLWD |
| 12 |  Crewe | 65 | 46 | 19 | 8 | 19 | 60 | 59 | WWWWL |
| 13 |  Swindon Town | 64 | 46 | 16 | 16 | 14 | 59 | 56 | DDLLW |
| 14 |  Oldham | 62 | 46 | 16 | 14 | 16 | 67 | 60 | DWLLL |
| 15 |  Northampton | 61 | 46 | 14 | 19 | 13 | 64 | 63 | DWLDW |
| 16 |  Cheltenham | 57 | 46 | 15 | 12 | 19 | 57 | 68 | DDLWL |
| 17 |  Grimsby | 56 | 46 | 16 | 8 | 22 | 45 | 56 | DLWLW |
| 18 |  Morecambe | 54 | 46 | 14 | 12 | 20 | 54 | 70 | DLWWD |
| 19 |  Crawley Town | 53 | 46 | 15 | 8 | 23 | 51 | 68 | WWDLW |
| 20 | Port Vale | 49 | 46 | 12 | 13 | 21 | 39 | 55 | LLDLD |
| 21 |  Cambridge United | 47 | 46 | 12 | 11 | 23 | 40 | 66 | LDLLD |
| 22 |  Macclesfield | 44 | 46 | 10 | 14 | 22 | 48 | 74 | LLDWD |
| 23 |  Notts County | 41 | 46 | 9 | 14 | 23 | 48 | 84 | LLDWL |
| 24 | Yeovil Town | 40 | 46 | 9 | 13 | 24 | 41 | 66 | LLDDD |
